GLEAM数据处理¶
准备处理数据¶
# 创建数据工作目录
$ mkdir tests
# 选定1组数据，修改代码obsid
$ cp /groups/workshop2023/home/share/datasets/obsid.tar.gz ~/tests/
# 解压数据
$ mkdir obsid
$ tar -xvf obsid_xxxxxx_vis.tar --directory obsid
准备处理环境¶
$ mkdir ~/GLEAM-X-pipeline
# 准备数据库
$ cp -rv /groups/workshop2023/home/share/GLEAM-X-pipeline/data ~/GLEAM-X-pipeline/
# 导入环境变量，每次打开新的shell窗口都需要执行
$ source /groups/workshop2023/home/share/setting/GLEAM-X-pipeline-ChinaSRC.profile
数据处理¶
步骤如下所示，请注意需要把obsid替换为需要处理的ID号码：
1#!/bin/bash
2srun --cpus-per-task=32 --ntasks=1 --ntasks-per-node=1 singularity exec /groups/workshop2023/home/share/images/gleamx_container_v2.sif ~/GLEAM-X-pipeline/template/cotter.sh obsid
1#!/bin/bash
2srun --cpus-per-task=1 --ntasks=1 --ntasks-per-node=1 singularity run /groups/workshop2023/home/share/images/gleamx_container_v2.sif ~/GLEAM-X-pipeline/template/autoflag.sh obsid
1#!/bin/bash
2srun --cpus-per-task=32 --ntasks=1 --ntasks-per-node=1 singularity run /groups/workshop2023/home/share/images/gleamx_container_v2.sif ~/GLEAM-X-pipeline/template/autocal.sh obsid
1#!/bin/bash
2srun --cpus-per-task=1 --ntasks=1 --ntasks-per-node=1 singularity run /groups/workshop2023/home/share/images/gleamx_container_v2.sif ~/GLEAM-X-pipeline/template/apply_cal.sh obsid
1#!/bin/bash
2srun --cpus-per-task=1 --ntasks=1 --ntasks-per-node=1 singularity run /groups/workshop2023/home/share/images/gleamx_container_v2.sif ~/GLEAM-X-pipeline/template/uvflag.sh obsid
1#!/bin/bash
2srun --cpus-per-task=32 --ntasks=1 --ntasks-per-node=1 singularity run /groups/workshop2023/home/share/images/gleamx_container_v2.sif ~/GLEAM-X-pipeline/template/image.sh obsid
其他详细信息¶
参考线下报告。